Explore our curated collection of training materials covering a wide range of topics in cloud computing, bioinformatics, and data science. These tutorials are designed for hands-on learning and support both beginners and advanced users.
Lesson materials are all available online, under a CC BY license, for self-directed study or for adaptation and re-use in your own training sessions.
Unix
Tutorials focused on basic Unix / Linux commands and shell usage.
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|---|---|---|---|---|
| Introduction to basic Unix commands |
main spring-school-2024 |
This is the introduction to the basic shell commands. | Christian Henke, Peter Belmann, Jan Krueger, Nils Hoffmann, Sebastian Juenemann, Viktor Rudko | 2H |
Cloud computing
Tutorials focused on using the de.NBI Cloud infrastructure and project types.
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|---|---|---|---|---|
| BiBiGrid Hands-on | main | FIXME | Xaver Stiensmeier, Jan Krueger, Nils Hoffmann, Alexander Walende | FIXME |
Machine Learning on Cloud infrastructure
Tutorials focused on setting up machine learning toolkits and applications on cloud infrastructure.
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|---|---|---|---|---|
| Setting up ML project in the cloud infrastructure | main | FIXME | Dilfuza Djamalova | 2H |
PATCH Tutorials
Tutorials in this group contain learning material about the tools contained inside the pangenomics toolbox PATCH
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|---|---|---|---|---|
| PanBench | main | Introduction to using the web interface of panbench.eu | Andreas Rempel | 10m |
Basic Data Management in the de.NBI Cloud
Tutorial focused on data management best practices and tools in the de.NBI Cloud.
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|---|---|---|---|---|
| Basic Data Management in the de.NBI Cloud | main | Basic Data Management in the de.NBI Cloud. Intended for a cloud-naive audience. | Abhijeet Shah, Sebastian Juenemann | 8H |
Metagenomics
Tutorials focused on handling of metagenomics sequencing data
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|
Data Management on the Cloud
Tutorials focused on Data Management solutions on the Cloud, including how to adapt a solution to the cloud (Kubernetes and S3 storage)
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|---|---|---|---|---|
| Using the cross-domain Data-Management Platform repository | main | A step-by-step overview of how to use the repository. | Alain Becam | 40 minutes |
Incubator
location for new tutorials, for review
| Tutorial | Versions | Slides | Description | Contributors | Estimated Time |
|---|---|---|---|---|---|
| Build a Simple Dataset Web App on EMBL Cloud Infrastructure | 1.0 | Learn to create and deploy a web application using Python, Streamlit, Docker/Podman, and Kubernetes on EMBL cloud computing infrastructure | author 1, author 2 | 2H |